Research

T-MDML

T-MDML: Triplet-based Multiple Distance Metric Learning for Multi-Instance Multi-Label Classification with Label Correlation The multi-instance multi-label (MIML) problem is a new supervised learning paradigm that has emerged to efficiently represent...

2024.12.10 | Dongyeon Kim·Yejin Kan·Gangman Yi

DeepPI

DeepPI: Alignment‑Free Analysis of Flexible Length Proteins Based on Deep Learning and Image Generator With the rapid development of NGS technology, the number of protein sequences has increased exponentially. Computational...

2024.02.03 | Mingeun Ji·Yejin Kan·Dongyeon Kim·Seungmin Lee·Gangman Yi

cPlot

cPlot: Contig-Plotting Visualization for the Analysis of Short-Read Nucleotide Sequence Alignments Advances in the next-generation sequencing technology have led to a dramatic decrease in read-generation cost and an increase in...

2022.09.21 | Gangman Yi

Gene Annotation

Next-generation sequencing (NGS) technologies have led to the accumulation of high-throughput sequence data from various organisms in biology. To apply gene annotation of organellar genomes for various organisms, more optimized...

2019.12.15 | Gangman Yi

geneCo

geneCo: A visualized comparative genomic method to analyze multiple genome structures method to analyze multiple genome structures In comparative and evolutionary genomics, a detailed comparison of common features between organisms...

2019.01.27 | Gangman Yi

Genome Search Plotter

A Robust Method for Finding the Automated Best Matched Genes Based on Grouping Similar Fragments of Large-Scale References for Genome Assembly Big data research on genomic sequence analysis has accelerated...

2017.09.13 | Gangman Yi

SClassify

Supervised Protein Family Classification and New Family Construction SClassify is a supervised protein family classification algorithm that overcomes the problems of existing supervised and unsupervised algorithms and achieves much improved...

2012.08.09 | Gangman Yi

C-Hunter

Identifying clusters of functionally related genes in genomes C-Hunter is a new clustering algorithm which incorporates knowledge of gene function derived from Gene Ontology, with the organization of genes on...

2007.05.01 | Gangman Yi